Program to find the consensus in unaligned sequences
This program determines consensus patterns in unaligned sequences. The algorithm is based on a matrix representation of a consensus pattern.
This program determines consensus patterns in unaligned sequences. The algorithm is based o...
Sequence analysis with profile Hidden Markov Models. Can search our BLAST format databases.
HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries.
HMMER is an implementation of profile HMM methods for sensitive ...
Program to find the consensus in unaligned sequences
"wconsensus" differs from the "consensus" program in that the user does not directly supply the width of the pattern being sought. However, the user still needs to vary a bias that directly influences the width of the pattern.
"wcon...
The Gibbs Motif Sampler will allow you to identify motifs, conserved regions, in DNA or protein sequences.
The Gibbs Motif Sampler will allow you to identify motifs, conserved regions, in DNA or protein sequences.
Pratt is a tool for discovering patterns that match some minimum number of a set of sequences. The sequences are input all in one file in either FastA or Swiss-Prot format.
Pratt is a tool for discovering patterns that match some minimum number of a set of sequences. The sequences are ...
SMILE est un outil d'inférence de motifs dans des jeux de séquences. À l'origine, il a été concu pour détecter des sites exceptionnels (sites de fixation ou de régulation de facteurs de transcription) dans des séquences d'ADN. L'intérêt de SMILE est de permettre l'inférence de motifs st...
This tool, of course, can not only be used for comparing methods, but also for investigating potential regulators and co-regulators of gene sets from experiments such as ChIP-chip and microarrays.